Thanks Adam. I did end up finding out a little more about the circuit relay. Thanks for backing it up.
To confuse the situation my car is originally an auto but the previous guy swapped it to manual.
Here is a link to the wiring diagrams
http://wright-here.net/files/manuals/1991RX7WiringDiagram.pdf
and attached what I believe are the correct pages.
Charging/Starting for A/T
then for M/T
and also Engine Control
Thanks again